well this is so but i guess you can take following steps if you find such warning in the search results of your site.
1. There is no direct way to remove the warning at the earliest.
2. File a request of review at http://www.stopbadware.org/home/review.
3. Make sure your site is not infected with any badware.
4. Check all the new scripts installed.
5. Check with your host for any hacking attempts.
I think this should help to let your site removed from the listing
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